PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000372.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 211aa    MW: 23320.1 Da    PI: 7.8808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000372.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-1655105255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y GVr +  +g+++AeIrd + ng   r++lg+f+ ae+Aa a+++a+  ++g
  Itr_sc000372.1_g00016.1  55 QYVGVRKRA-WGKYAAEIRDSTRNG--MRVWLGTFDNAEDAALAYDQAAFLIRG 105
                              79****887.**********44465..**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-2155114IPR016177DNA-binding domain
PfamPF008471.2E-955105IPR001471AP2/ERF domain
PROSITE profilePS5103220.86355113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2855114IPR001471AP2/ERF domain
CDDcd000181.08E-2555113No hitNo description
SMARTSM003802.0E-3255119IPR001471AP2/ERF domain
PRINTSPR003672.9E-85667IPR001471AP2/ERF domain
PRINTSPR003672.9E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEDLYNAIPF DYEWDNDALR LSAEEEEIIS GVKSSQKPDA SKGIVAKEAA AAEKQYVGVR  60
KRAWGKYAAE IRDSTRNGMR VWLGTFDNAE DAALAYDQAA FLIRGPKTYL NFPSERVRKS  120
LQEIKCSCKS GSSPVDALKE NNKKRSCSSN STRCDGTRSK RSVKKNSPVV VFEDLGPELL  180
DQLLSQSSDY ILPPATTTPA DGRSTITYSF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2454113160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624600.14e-55PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-46ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A022S0A85e-50A0A022S0A8_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000344893e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-35ethylene response factor 1